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1

Signal transduction network motifs and biological memory

Zhangang Han, Thomas M. Vondriska, Ling Yang, W. Robb MacLellan, James N. Weiss, Zhilin Qu

Journal:

Journal of Theoretical Biology

Year:

2007

Language:

english

File:

PDF, 238 KB

english, 2007

2

Cardiovascular-related proteins identified in human plasma by the HUPO Plasma Proteome Project Pilot Phase

Beniam T. Berhane, Chenggong Zong, David A. Liem, Aaron Huang, Steven Le, Ricky D. Edmondson, Richard C. Jones, Xin Qiao, Julian P. Whitelegge, Peipei Ping, Thomas M. Vondriska

Journal:

Year:

2005

Language:

english

File:

PDF, 140 KB

english, 2005

3

A functional annotation of subproteomes in human plasma

Peipei Ping, Thomas M. Vondriska, Chad J. Creighton, TKB Gandhi, Ziping Yang, Rajasree Menon, Min-Seok Kwon, Sang Yun Cho, Garry Drwal, Markus Kellmann, Suraj Peri, Shubha Suresh, Mads Gronborg, Henri

Journal:

Year:

2005

Language:

english

File:

PDF, 823 KB

english, 2005

4

Systematic characterization of the murine mitochondrial proteome using functionally validated cardiac mitochondria

Jun Zhang, Xiaohai Li, Michael Mueller, Yueju Wang, Chenggong Zong, Ning Deng, Thomas M. Vondriska, David A. Liem, Jeong-In Yang, Paavo Korge, Henry Honda, James N. Weiss, Rolf Apweiler, Peipei Ping

Journal:

Year:

2008

Language:

english

File:

PDF, 526 KB

english, 2008

5

Cardiovascular Initiative of the Human Proteome Organisation, 5th Workshop October 2007, Seoul, Korea

Sarah Warburton, Melanie Y. White, Jennifer E. Van Eyk, Robert J. Cotter, Peipei Ping, Michael J. Dunn, Thomas M. Vondriska

Journal:

Year:

2008

Language:

english

File:

PDF, 177 KB

english, 2008

6

Proteomic insights into cardiac cell death and survival

W. Robb MacLellan, Yibin Wang, Thomas M. Vondriska, James N. Weiss, Peipei Ping

Journal:

PROTEOMICS - Clinical Applications

Year:

2008

Language:

english

File:

PDF, 238 KB

english, 2008

7

Highly efficient purification of protein complexes from mammalian cells using a novel streptavidin-binding peptide and hexahistidine tandem tag system: Application to Bruton's tyrosine kinase

Yifeng Li, Sarah Franklin, Michael J. Zhang, Thomas M. Vondriska

Journal:

Protein Science

Year:

2011

Language:

english

File:

PDF, 1.26 MB

english, 2011

8

The Murine Cardiac 26S Proteasome: An Organelle Awaiting Exploration

ALDRIN V. GOMES, CHENGGONG ZONG, RICKY D. EDMONDSON, BENIAM T. BERHANE, GUANG-WU WANG, STEVEN LE, GLEN YOUNG, JUN ZHANG, THOMAS M. VONDRISKA, JULIAN P. WHITELEGGE, RICHARD C. JONES, IRVING G. JOSHUA,

Journal:

Annals of the New York Academy of Sciences

Year:

2005

Language:

english

File:

PDF, 882 KB

english, 2005

9

Cardiac toxic effects oftrans-2-hexenal are mediated by induction of cardiomyocyte apoptotic pathways

Peipei Ping, Christopher P. Baines, Yan Gu, Sumanth D. Prabhu, Jun Zhang, Linda L. Tsai, Ernest Cardwell, Nobel C. Zong, Thomas M. Vondriska, Paavo Korge, Aruni Bhatnagar, Guang-Wu Wang

Journal:

Cardiovascular Toxicology

Year:

2003

Language:

english

File:

PDF, 774 KB

english, 2003

10

Deducing topology of protein-protein interaction networks from experimentally measured sub-networks

Ling Yang, Thomas M Vondriska, Zhangang Han, W Robb MacLellan, James N Weiss, Zhilin Qu

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 472 KB

english, 2008

11

Scaffold proteins and assembly of multiprotein signaling complexes

Thomas M Vondriska, Jason M Pass, Peipei Ping

Journal:

Journal of Molecular and Cellular Cardiology

Year:

2004

Language:

english

File:

PDF, 181 KB

english, 2004

12

A35. Prevention of pore-formation by voltage-dependent anion channel protects against mitochondrial dysfunction and cell death

Jun Zhang, Thomas M. Vondriska, David A. Liem, Shushi Nagamori, Jeff Abramson, Guangwu Wang, Rachna Ujwal, Chenggong Zong, Michael J. Zhang, James N. Weiss, Ronald H. Kaback, Peipei Ping

Journal:

Journal of Molecular and Cellular Cardiology

Year:

2006

Language:

english

File:

PDF, 51 KB

english, 2006

13

Acrolein consumption exacerbates myocardial ischemic injury and blocks nitric oxide-induced PKCε signaling and cardioprotection

Guang-Wu Wang, Yiru Guo, Thomas M. Vondriska, Jun Zhang, Su Zhang, Linda L. Tsai, Nobel C. Zong, Roberto Bolli, Aruni Bhatnagar, Sumanth D. Prabhu

Journal:

Journal of Molecular and Cellular Cardiology

Year:

2008

Language:

english

File:

PDF, 1006 KB

english, 2008

14

Proteomic and metabolomic analysis of cardioprotection: Interplay between protein kinase C epsilon and delta in regulating glucose metabolism of murine hearts

Manuel Mayr, David Liem, Jun Zhang, Xiaohai Li, Nuraly K. Avliyakulov, Jeong In Yang, Glen Young, Tom M. Vondriska, Christophe Ladroue, Basetti Madhu, John R. Griffiths, Aldrin Gomes, Qingbo Xu, Peipe

Journal:

Journal of Molecular and Cellular Cardiology

Year:

2009

Language:

english

File:

PDF, 2.72 MB

english, 2009

15

Post-translational regulation of calsarcin-1 during pressure overload-induced cardiac hypertrophy

Anna K. Paulsson, Sarah Franklin, Scherise A. Mitchell-Jordan, Shuxun Ren, Yibin Wang, Thomas M. Vondriska

Journal:

Journal of Molecular and Cellular Cardiology

Year:

2010

Language:

english

File:

PDF, 1.53 MB

english, 2010

16

Multiprotein signaling complexes and regulation of cardiac phenotype

Thomas M Vondriska, Peipei Ping

Journal:

Journal of Molecular and Cellular Cardiology

Year:

2003

Language:

english

File:

PDF, 144 KB

english, 2003

17

Structural considerations for chromatin state models with transcription as a functional readout

Haodong Chen, Emma Monte, Michelle S. Parvatiyar, Manuel Rosa-Garrido, Sarah Franklin, Thomas M. Vondriska

Journal:

Year:

2012

Language:

english

File:

PDF, 624 KB

english, 2012

18

Features of endogenous cardiomyocyte chromatin revealed by super‐resolution STED microscopy

Scherise Mitchell-Jordan, Haodong Chen, Sarah Franklin, Enrico Stefani, Laurent A. Bentolila, Thomas M. Vondriska

Journal:

Journal of Molecular and Cellular Cardiology

Year:

2012

Language:

english

File:

PDF, 1.19 MB

english, 2012

19

Heart disease leaves its mark: Proteomics-based biosignatures in acute coronary syndromes

W.Robb MacLellan, Peipei Ping, Thomas Vondriska

Journal:

Journal of the American College of Cardiology

Year:

2004

Language:

english

File:

PDF, 63 KB

english, 2004

20

The C-terminus of 5-HT2AR Directly Interacts with the N-terminal Half of c-Src by a Tyrosine Phosphorylation Independent Mechanism

Lu, Rong, Li, YiFeng, Alioua, Abderrahmane, Kundu, Pallob, Li, Min, Kumar, Yogesh, Vondriska, Thomas, Stefani, Enrico, Toro, Ligia

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 60 KB

english, 2009

21

PPM1l encodes an inositol requiring-protein 1 (IRE1) specific phosphatase that regulates the functional outcome of the ER stress response

Lu, Gang, Ota, Asuka, Ren, Shuxun, Franklin, Sarah, Rau, Christoph D., Ping, Peipei, Lane, Timothy F., Zhou, Z. Hong, Reue, Karen, Lusis, Aldons J., Vondriska, Thomas, Wang, Yibin

Journal:

Molecular Metabolism

Year:

2013

Language:

english

File:

PDF, 3.26 MB

english, 2013

22

Altered Proteome Biology of Cardiac Mitochondria Under Stress Conditions

Zhang, Jun, Liem, David A., Mueller, Michael, Wang, Yueju, Zong, Chenggong, Deng, Ning, Vondriska, Thomas M., Korge, Paavo, Drews, Oliver, MacLellan, W. Robb, Honda, Henry, Weiss, James N., Apweiler,

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 5.15 MB

english, 2008

23

Mesenchymal–endothelial transition contributes to cardiac neovascularization

Ubil, Eric, Duan, Jinzhu, Pillai, Indulekha C. L., Rosa-Garrido, Manuel, Wu, Yong, Bargiacchi, Francesca, Lu, Yan, Stanbouly, Seta, Huang, Jie, Rojas, Mauricio, Vondriska, Thomas M., Stefani, Enrico,

Journal:

Year:

2014

Language:

english

File:

PDF, 3.95 MB

english, 2014

24

Epigenomes: The missing heritability in human cardiovascular disease?

Monte, Emma, Vondriska, Thomas M.

Journal:

PROTEOMICS - Clinical Applications

Year:

2014

Language:

english

File:

PDF, 451 KB

english, 2014

25

The effects of cascade length, kinetics and feedback loops on biological signal transduction dynamics in a simplified cascade model

Qu, Zhilin, Vondriska, Thomas M

Journal:

Physical Biology

Year:

2009

Language:

english

File:

PDF, 642 KB

english, 2009

26

Positive Feedback in Cardioprotection: Can More Mechanism Lead to Translation?

Chapski, D. J., Monte, E., Vondriska, T. M.

Journal:

Circulation Research

Year:

2014

Language:

english

File:

PDF, 632 KB

english, 2014

27

How the proteome packages the genome for cardiovascular development

Karbassi, Elaheh, Vondriska, Thomas M.

Journal:

Year:

2014

Language:

english

File:

PDF, 344 KB

english, 2014

28

Proteomics in Chromatin Biology and Epigenetics

Vondriska, Thomas M., Jensen, Ole N.

Journal:

Year:

2014

Language:

english

File:

PDF, 130 KB

english, 2014

29

Target identification using drug affinity responsive target stability (DARTS)

Lomenick, B., Hao, R., Jonai, N., Chin, R. M., Aghajan, M., Warburton, S., Wang, J., Wu, R. P., Gomez, F., Loo, J. A., Wohlschlegel, J. A., Vondriska, T. M., Pelletier, J., Herschman, H. R., Clardy, J

Journal:

Proceedings of the National Academy of Sciences

Year:

2009

Language:

english

File:

PDF, 1.17 MB

english, 2009

30

Preclinical trials: Keep 'reproducibility' in context

Picha, Brad, Thompson, Matthew, Vondriska, Thomas M.

Journal:

Year:

2012

Language:

english

File:

PDF, 208 KB

english, 2012

31

Specialized compartments of cardiac nuclei exhibit distinct proteomic anatomy

Franklin, S., Zhang, M. J., Chen, H., Paulsson, A. K., Mitchell-Jordan, S. A., Li, Y., Ping, P., Vondriska, T. M.

Journal:

Molecular & Cellular Proteomics

Year:

2011

Language:

english

File:

PDF, 2.21 MB

english, 2011

32

Loss of Bmx Nonreceptor Tyrosine Kinase Prevents Pressure Overload-Induced Cardiac Hypertrophy

Mitchell-Jordan, S. A., Holopainen, T., Ren, S., Wang, S., Warburton, S., Zhang, M. J., Alitalo, K., Wang, Y., Vondriska, T. M.

Journal:

Circulation Research

Year:

2008

Language:

english

File:

PDF, 808 KB

english, 2008

33

Protein targets of oxidized phospholipids in endothelial cells

Gugiu, B. G., Mouillesseaux, K., Duong, V., Herzog, T., Hekimian, A., Koroniak, L., Vondriska, T. M., Watson, A. D.

Journal:

The Journal of Lipid Research

Year:

2008

Language:

english

File:

PDF, 372 KB

english, 2008

34

Protein Kinase C -Src Modules Direct Signal Transduction in Nitric Oxide-Induced Cardioprotection : Complex Formation as a Means for Cardioprotective Signaling

Vondriska, T. M., Zhang, J., Song, C., Tang, X.-L., Cao, X., Baines, C. P., Pass, J. M., Wang, S., Bolli, R., Ping, P.

Journal:

Circulation Research

Year:

2001

Language:

english

File:

PDF, 976 KB

english, 2001

35

Genomes, Proteomes, and the Central Dogma

Franklin, S., Vondriska, T. M.

Journal:

Circulation Cardiovascular Genetics

Year:

2011

Language:

english

File:

PDF, 839 KB

english, 2011

36

A New (Heat) Shocking Player in Cardiac Hypertrophy

Vondriska, T. M., Wang, Y.

Journal:

Circulation Research

Year:

2008

Language:

english

File:

PDF, 307 KB

english, 2008

37

Quantitative Analysis of the Chromatin Proteome in Disease Reveals Remodeling Principles and Identifies High Mobility Group Protein B2 as a Regulator of Hypertrophic Growth

Franklin, S., Chen, H., Mitchell-Jordan, S., Ren, S., Wang, Y., Vondriska, T. M.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 2.86 MB

english, 2012

38

Stress signaling by Tec tyrosine kinase in the ischemic myocardium

Zhang, M. J., Franklin, S., Li, Y., Wang, S., Ru, X., Mitchell-Jordan, S. A., Mano, H., Stefani, E., Ping, P., Vondriska, T. M.

Journal:

AJP Heart and Circulatory Physiology

Year:

2010

Language:

english

File:

PDF, 1.51 MB

english, 2010

39

Systems proteomics of cardiac chromatin identifies nucleolin as a regulator of growth and cellular plasticity in cardiomyocytes

Monte, E., Mouillesseaux, K., Chen, H., Kimball, T., Ren, S., Wang, Y., Chen, J.-N., Vondriska, T. M., Franklin, S.

Journal:

AJP Heart and Circulatory Physiology

Year:

2013

Language:

english

File:

PDF, 4.78 MB

english, 2013

40

Transcriptome and proteome dynamics in the cardiovascular system

Vondriska, Thomas M.

Journal:

The Journal of Physiology

Year:

2015

Language:

english

File:

PDF, 80 KB

english, 2015

41

Functional proteomics to study protection of the ischaemic myocardium

Ping, Peipei, Vondriska, Thomas M

Journal:

Expert Opinion on Therapeutic Targets

Year:

2002

Language:

english

File:

PDF, 374 KB

english, 2002

42

Not low hanging but still sweet: metabolic proteomes in cardiovascular disease

Monte, Emma, Lopez, Rachel, Vondriska, Thomas M.

Journal:

Journal of Molecular and Cellular Cardiology

Year:

2015

Language:

english

File:

PDF, 487 KB

english, 2015

43

DNA Methylation Indicates Susceptibility to Isoproterenol-Induced Cardiac Pathology and Is Associated With Chromatin States

Chen, Haodong, Orozco, Luz D, Wang, Jessica, Rau, Christoph D, Rubbi, Liudmilla, Ren, Shuxun, Wang, Yibin, Pellegrini, Matteo, Lusis, Aldons J, Vondriska, Thomas M

Journal:

Circulation Research

Year:

2016

Language:

english

File:

PDF, 4.95 MB

english, 2016

44

Protein tyrosine kinase signaling is necessary for NO donor-induced late preconditioning against myocardial stunning

Tang, Xian-Liang, Kodani, Eitaro, Takano, Hitoshi, Hill, Michael, Shinmura, Ken, Vondriska, Thomas M., Ping, Peipei, Bolli, Roberto

Journal:

AJP Heart and Circulatory Physiology

Year:

2003

Language:

english

File:

PDF, 342 KB

english, 2003

45

Operationalizing Precision Cardiovascular Medicine

Wang, Jessica J., Aboulhosn, Jamil A., Hofer, Ira S., Mahajan, Aman, Wang, Yibin, Vondriska, Thomas M.

Journal:

Circulation Research

Year:

2016

Language:

english

File:

PDF, 1.49 MB

english, 2016

46

Regulation of Chromatin Structure in the Cardiovascular System

Rosa-Garrido, Manuel, Karbassi, Elaheh, Monte, Emma, Vondriska, Thomas M.

Journal:

Circulation Journal

Year:

2013

Language:

english

File:

PDF, 754 KB

english, 2013

47

Epigenomic Disruption of Cardiovascular Care

Monte, Emma, Fischer, Matthew A., Vondriska, Thomas M.

Journal:

Circulation Research

Year:

2017

Language:

english

File:

PDF, 215 KB

english, 2017

48

Neural Circuit-Specialized Astrocytes: Transcriptomic, Proteomic, Morphological, and Functional Evidence

Chai, Hua, Diaz-Castro, Blanca, Shigetomi, Eiji, Monte, Emma, Octeau, J. Christopher, Yu, Xinzhu, Cohn, Whitaker, Rajendran, Pradeep S., Vondriska, Thomas M., Whitelegge, Julian P., Coppola, Giovanni,

Journal:

Year:

2017

Language:

english

File:

PDF, 10.07 MB

english, 2017

49

Quantitative Analysis of Chromatin Proteomes in Disease

Monte, Emma, Chen, Haodong, Kolmakova, Maria, Parvatiyar, Michelle, Vondriska, Thomas M., Franklin, Sarah

Journal:

Journal of Visualized Experiments

Year:

2012

Language:

english

File:

PDF, 494 KB

english, 2012

50

Comparative behavioural observations demonstrate the ‘cleaner’ shrimp Periclimenes yucatanicus engages in true symbiotic cleaning interactions

Titus, Benjamin M., Vondriska, Clayton, Daly, Marymegan

Journal:

Royal Society Open Science

Year:

2017

Language:

english

File:

PDF, 718 KB

english, 2017

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